PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.004G218900.1
Common NameB456_004G218900, LOC105792284
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 306aa    MW: 32118.2 Da    PI: 5.7091
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.004G218900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.41.5e-09154198554
                         HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                         h+++Er RR+ri +++  L+el+P+ +      K + a +L + v+Y+k L
  Gorai.004G218900.1 154 HSIAERLRRERIAERIRALQELVPSvN------KTDRAVMLDEIVDYVKFL 198
                         99***********************55......****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.06E-15147208IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.044149198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-14151208IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.5E-7154198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-10155204IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009567Biological Processdouble fertilization forming a zygote and endosperm
GO:0031347Biological Processregulation of defense response
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MANNPNEASA DDFLEQILGF PNFAPSETGL AGPDGGLTGT TAGAGTPMFL QLSSGDGASH  60
LGGIGGGGGG AFPGQVFPLG LSLDQGKSGG FLKPEEGSGG SSRRFRDEVV DGRASSVKNV  120
FHGSPMPATV APSPHPPTMR PRVRARRGQA TDPHSIAERL RRERIAERIR ALQELVPSVN  180
KTDRAVMLDE IVDYVKFLRL QVKVLSMSRL GGAGAVAPLV TDIPLSSVED ESGDGGRNQP  240
AWEKWSNDGT ERQVAKLMEE NVGAAMQFLQ SKALCIMPIS LATAIYHSQP LDTSSIVKPE  300
TDPPP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1158163RLRRER
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012476242.10.0PREDICTED: transcription factor UNE12-like
RefseqXP_012476243.10.0PREDICTED: transcription factor UNE12-like
SwissprotO227681e-134UNE12_ARATH; Transcription factor UNE12
TrEMBLA0A0D2PGB40.0A0A0D2PGB4_G
STRINGGLYMA19G34360.11e-153(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16112888
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02590.21e-123bHLH family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]